Gene detail information of Glyur000673s00024275.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26030.3 | 5.00E-14 | F-box/RNI-like/FBD-like domains-containing protein |
| NR | XP_004504896.1 | 5.02E-152 | PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8H1M0|FDL16_ARATH | 1.00E-14 | F-box/FBD/LRR-repeat protein At2g26030 |
| trEMBL | tr|A0A072UNA8|A0A072UNA8_MEDTR | 1.00E-149 | F-box/RNI superfamily protein {ECO:0000313|EMBL:KEH31187.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00673 | 16012 | 17827 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000673s00024275.1 | PF00646.28 | F-box | 32 | 71 | 3.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.072 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.209 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.497 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.464 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.341 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.634 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.034 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.006 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.006 |
| SRR2967015 | Control (Tissue:root) | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.002 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.020 |
| SRR8400027 | Control-Root | 3.671 |