Gene detail information of Glyur000673s00024281.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G70320.1 | 0 | ubiquitin-protein ligase 2 |
NR | XP_004501669.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase UPL1-like isoform X1 [Cicer arietinum] |
Swissprot | tr|Q8H0T4|UPL2_ARATH | 0 | E3 ubiquitin-protein ligase UPL2 |
trEMBL | tr|I1K9T4|I1K9T4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G10360.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00673 | 72315 | 86228 | - |
Gene family
Gene family | subfamily |
---|---|
Ubiquitin Family | HECT |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K10592 | HUWE1, MULE, ARF-BP1 | EC:2.3.2.26 | Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000673s00024281.1 | PF06012.7 | DUF908 | 74 | 345 | 2.40E-32 |
Glyur000673s00024281.1 | PF06025.7 | DUF913 | 439 | 773 | 6.40E-65 |
Glyur000673s00024281.1 | PF00627.26 | UBA | 1267 | 1303 | 9.70E-08 |
Glyur000673s00024281.1 | PF14377.1 | DUF4414 | 2543 | 2636 | 1.80E-27 |
Glyur000673s00024281.1 | PF00632.20 | HECT | 3364 | 3592 | 1.70E-68 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 21.252 |
SRR1783600 | control | 21.378 |
SRR1783602 | moderate drought stress | 27.125 |
SRR1811619 | moderate drought stress | 27.084 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 18.456 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 18.506 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 19.547 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 19.117 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 19.004 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 18.870 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.129 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.170 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 36.920 |
SRR2868004 | Drought Stress(Tissue:root) | 41.108 |
SRR2967015 | Control (Tissue:root) | 39.994 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 12.623 |
SRR9715740 | Leave | 13.923 |
SRR9715741 | Leave | 15.886 |
SRR9715739 | Root | 3.965 |
SRR9715742 | Root | 39.153 |
SRR9715743 | Root | 32.659 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 15.428 |
SRR8749028 | MeJA induced 9h | 28.384 |
SRR8749029 | MeJA induced 9h | 11.649 |
SRR8749030 | Uninduced | 15.059 |
SRR8749031 | Uninduced | 13.904 |
SRR8749032 | Uninduced | 10.345 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 31.979 |
SRR8400027 | Control-Root | 34.402 |