Gene detail information of Glyur000673s00024281.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G70320.10ubiquitin-protein ligase 2
NRXP_004501669.10PREDICTED: E3 ubiquitin-protein ligase UPL1-like isoform X1 [Cicer arietinum]
Swissprottr|Q8H0T4|UPL2_ARATH0E3 ubiquitin-protein ligase UPL2
trEMBLtr|I1K9T4|I1K9T4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G10360.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006737231586228-


Gene family

Gene familysubfamily
Ubiquitin FamilyHECT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10592HUWE1, MULE, ARF-BP1 EC:2.3.2.26 Ubiquitin mediated proteolysis map04120


Gene Ontology

molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000673s00024281.1PF06012.7DUF908743452.40E-32
Glyur000673s00024281.1PF06025.7DUF9134397736.40E-65
Glyur000673s00024281.1PF00627.26UBA126713039.70E-08
Glyur000673s00024281.1PF14377.1DUF4414254326361.80E-27
Glyur000673s00024281.1PF00632.20HECT336435921.70E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.252
SRR1783600control21.378
SRR1783602moderate drought stress27.125
SRR1811619moderate drought stress27.084

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.456
DRR006520Root Summer glycyrrhizin high producing strain18.506
DRR006521Root Winter glycyrrhizin high producing strain19.547
DRR006522Root Winter glycyrrhizin high producing strain19.117
DRR006523Root Summer glycyrrhizin low producing strain19.004
DRR006524Root Summer glycyrrhizin low producing strain18.870
DRR006525Leaf Summer glycyrrhizin high producing strain10.129
DRR006526Leaf Summer glycyrrhizin high producing strain10.170

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.920
SRR2868004Drought Stress(Tissue:root)41.108
SRR2967015Control (Tissue:root)39.994

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.623
SRR9715740Leave13.923
SRR9715741Leave15.886
SRR9715739Root3.965
SRR9715742Root39.153
SRR9715743Root32.659

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.428
SRR8749028MeJA induced 9h28.384
SRR8749029MeJA induced 9h11.649
SRR8749030Uninduced15.059
SRR8749031Uninduced13.904
SRR8749032Uninduced10.345

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.979
SRR8400027Control-Root34.402

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved