Gene detail

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Gene detail information of Glyur000673s00024287.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29420.1	5.00E-18	glutathione S-transferase tau 7
NR	AFK37185.1	1.40E-63	unknown [Medicago truncatula]
Swissprot	tr\|Q9FQA3\|GST23_MAIZE	2.00E-36	Glutathione transferase GST 23
trEMBL	tr\|I3SA93\|I3SA93_MEDTR	5.00E-64	Uncharacterized protein {ECO:0000313\|EMBL:AFK37185.1}

Sequence

Transcript Sequence

>Glyur000673s00024287.1
ATGGTTGAACCTGATGATGCAGAGCGTTCTGGGGGTAGTCCATTTGCCCTCAGGGTCAAGTGGGCTCTTGGACTGAAAGGAGTTCAGTACCAATATGTGGAAGAAGATCTCAGCAACAAGAGTGCCATGCTCTTGCAATTCGTTGATGAAAAGTATGTGCCAGCACTTATGGCTACCATTTCCAAAGGAGGGGAGGAACAACAGAAGGCAAAACAAGAAGCCCGAGAGAATCTGAAGACCCTTGAAGGAGGACTTGAGGGAAAGCGCTACTTTGGAGGTGAAAAAATAGGCTTCACTGACATTGCTGTTGGGTGGCTTGGATGCTGGGTTCGAATAATGGAGGAAATTGTAGGCATAAAACTAATTGATACAGAGTCGATGGCCAAGCTTAATGCTTATTTCGATGATTTTCTTGAGCTTCCTATTATCAAAGAATGCATGCCCCCTCGTGATAGGCTGCTTGAGTACAACAAGGCCTTCCACAAATTGTCAGTACTAGAAAGGGTCTAATCATTNTTCCACCATTTTGAAGATGGGAGAGGACAGTTTACCATTAGAAAGGTGTAAACTAGAAAGACCAAAATTGTCAGTACTAATAGTCGTTTGAAATTTGCACTTCAAAATGCATCCCAGAATACTCTAGTCTGCAGTGGCCATCTGAAGTCGCCATGGTCTCCTCCAACCCGATTTCTCAACTTAGTATAGGCTCTCGGTGCTTTGCTCCATCTATCTTTTCGGTTTCTATTATCTTAACAACCTTTGAATGTATTACATTTGGCTATGCACCTTGAGCTGAACATTATATGCTGAGCTGCAAATCATAAACAAATGCATGAACATGAACAAATAGTCTTCGTGAAAAGGGGACTAACTTTAGGAGAGGCAGAGAACTCAAGAGGATAGTACAAACAAATATCAACATCACCACAGCATGATTGGCTTTGTTTCTTTATGCTACTAATGCAATTGTTTGTCTTGGTTGCTGCTGGCCATACCACTATTAATACTGTGAGCAATGATAGAAATTTAACCTTTCAATCATCATGTAAACTCATATCAAACCT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00673	108048	110131	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00799	GST, gst	EC:2.5.1.18	Glutathione metabolism	map00480
			Metabolism of xenobiotics by cytochrome P450	map00980
			Drug metabolism - cytochrome P450	map00982
			Chemical carcinogenesis	map05204
			Fluid shear stress and atherosclerosis	map05418
			Platinum drug resistance	map01524

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000673s00024287.1	PF13417.1	GST_N_3	11	57	8.00E-07
Glyur000673s00024287.1	PF00043.20	GST_C	55	141	9.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.129
SRR1783600	control	4.798
SRR1783602	moderate drought stress	7.799
SRR1811619	moderate drought stress	8.309

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.381
DRR006520	Root Summer glycyrrhizin high producing strain	4.451
DRR006521	Root Winter glycyrrhizin high producing strain	6.477
DRR006522	Root Winter glycyrrhizin high producing strain	6.179
DRR006523	Root Summer glycyrrhizin low producing strain	7.447
DRR006524	Root Summer glycyrrhizin low producing strain	6.999
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.073
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.841

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	20.476
SRR2868004	Drought Stress(Tissue:root)	11.520
SRR2967015	Control (Tissue:root)	15.637

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.804
SRR9715740	Leave	8.339
SRR9715741	Leave	6.227
SRR9715739	Root	0.296
SRR9715742	Root	1.080
SRR9715743	Root	1.696

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.929
SRR8749028	MeJA induced 9h	8.010
SRR8749029	MeJA induced 9h	10.029
SRR8749030	Uninduced	17.570
SRR8749031	Uninduced	15.582
SRR8749032	Uninduced	12.446

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	14.323
SRR8400027	Control-Root	17.246