Gene detail information of Glyur000675s00024229.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13960.1 | 3.00E-33 | growth-regulating factor 5 |
| NR | XP_003540042.1 | 2.08E-166 | PREDICTED: growth-regulating factor 4-like [Glycine max] |
| Swissprot | tr|Q6ZIK5|GRF4_ORYSJ | 2.00E-67 | Growth-regulating factor 4 |
| trEMBL | tr|I1LP40|I1LP40_SOYBN | 8.00E-167 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G01730.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00675 | 81484 | 85954 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000675s00024229.1 | PF08880.6 | QLQ | 31 | 67 | 6.10E-18 |
| Glyur000675s00024229.1 | PF08879.5 | WRC | 120 | 164 | 2.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.290 |
| SRR1783600 | control | 4.121 |
| SRR1783602 | moderate drought stress | 7.329 |
| SRR1811619 | moderate drought stress | 7.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.094 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.005 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.353 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.523 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.305 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.808 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.644 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.390 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.246 |
| SRR2967015 | Control (Tissue:root) | 5.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.423 |
| SRR9715740 | Leave | 3.592 |
| SRR9715741 | Leave | 2.450 |
| SRR9715739 | Root | 0.772 |
| SRR9715742 | Root | 1.229 |
| SRR9715743 | Root | 0.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.836 |
| SRR8749028 | MeJA induced 9h | 1.150 |
| SRR8749029 | MeJA induced 9h | 0.834 |
| SRR8749030 | Uninduced | 3.062 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.081 |
| SRR8400027 | Control-Root | 4.969 |