Gene detail information of Glyur000676s00021521.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G50850.11.00E-176Transketolase family protein
NRKHN40000.10Pyruvate dehydrogenase E1 component subunit beta, mitochondrial [Glycine soja]
COGYP_007020176.19.00E-167transketolase [Candidatus Endolissoclinum faulkneri L2]
Swissprottr|P52904|ODPB_PEA0Pyruvate dehydrogenase E1 component subunit beta, mitochondrial (Precursor)
trEMBLtr|I1JJD2|I1JJD2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G46380.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006761598220575+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00162PDHB, pdhB EC:1.2.4.1 Carbon metabolism map01200
Glycolysis / Gluconeogenesismap00010
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922
Central carbon metabolism in cancermap05230


Gene Ontology

biological_process

GO:0006086  acetyl-CoA biosynthetic process from pyruvate

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004739  pyruvate dehydrogenase (acetyl-transferring) activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000676s00021521.1PF02779.19Transket_pyr282036.90E-46
Glyur000676s00021521.1PF02780.15Transketolase_C2223432.80E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control112.544
SRR1783600control113.244
SRR1783602moderate drought stress84.125
SRR1811619moderate drought stress83.885

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain101.686
DRR006520Root Summer glycyrrhizin high producing strain99.832
DRR006521Root Winter glycyrrhizin high producing strain98.757
DRR006522Root Winter glycyrrhizin high producing strain96.213
DRR006523Root Summer glycyrrhizin low producing strain75.174
DRR006524Root Summer glycyrrhizin low producing strain75.754
DRR006525Leaf Summer glycyrrhizin high producing strain74.819
DRR006526Leaf Summer glycyrrhizin high producing strain74.713

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)292.864
SRR2868004Drought Stress(Tissue:root)241.970
SRR2967015Control (Tissue:root)214.092

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave132.062
SRR9715740Leave118.839
SRR9715741Leave139.173
SRR9715739Root76.489
SRR9715742Root99.176
SRR9715743Root99.633

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h131.366
SRR8749028MeJA induced 9h118.785
SRR8749029MeJA induced 9h109.185
SRR8749030Uninduced139.027
SRR8749031Uninduced126.889
SRR8749032Uninduced139.661

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root192.610
SRR8400027Control-Root185.618

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved