Gene detail information of Glyur000676s00021540.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76630.2 | 5.00E-83 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004511281.1 | 3.02E-126 | PREDICTED: tetratricopeptide repeat protein 37-like isoform X2 [Cicer arietinum] |
| COG | YP_005070098.1 | 1.00E-10 | TPR domain protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q9M8Y0|SEC_ARATH | 5.00E-08 | Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC |
| trEMBL | tr|K7K5N9|K7K5N9_SOYBN | 9.00E-123 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G45670.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00676 | 124066 | 129418 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT41 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000676s00021540.1 | PF08238.7 | Sel1 | 25 | 53 | 5.1 |
| Glyur000676s00021540.1 | PF00515.23 | TPR_1 | 75 | 91 | 0.00029 |
| Glyur000676s00021540.1 | PF13414.1 | TPR_11 | 128 | 190 | 1.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.277 |
| SRR1783600 | control | 18.759 |
| SRR1783602 | moderate drought stress | 23.651 |
| SRR1811619 | moderate drought stress | 22.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.594 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.215 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.848 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.738 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.362 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.508 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 34.124 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.263 |
| SRR2967015 | Control (Tissue:root) | 44.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.879 |
| SRR9715740 | Leave | 7.158 |
| SRR9715741 | Leave | 10.966 |
| SRR9715739 | Root | 8.003 |
| SRR9715742 | Root | 31.673 |
| SRR9715743 | Root | 25.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.451 |
| SRR8749028 | MeJA induced 9h | 21.536 |
| SRR8749029 | MeJA induced 9h | 4.242 |
| SRR8749030 | Uninduced | 3.320 |
| SRR8749031 | Uninduced | 6.428 |
| SRR8749032 | Uninduced | 2.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 42.057 |
| SRR8400027 | Control-Root | 37.714 |