Gene detail information of Glyur000677s00026170.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51190.1 | 3.00E-150 | Integrase-type DNA-binding superfamily protein |
| NR | KHN25253.1 | 0 | AP2-like ethylene-responsive transcription factor PLT2 [Glycine soja] |
| Swissprot | tr|Q5YGP7|PLET2_ARATH | 0 | AP2-like ethylene-responsive transcription factor PLT2 |
| trEMBL | tr|I1LQI0|I1LQI0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G06010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00677 | 18477 | 21543 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000677s00026170.1 | PF00847.15 | AP2 | 172 | 228 | 7.70E-09 |
| Glyur000677s00026170.1 | PF00847.15 | AP2 | 271 | 322 | 5.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.042 |
| SRR1783600 | control | 0.021 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.128 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.362 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.173 |
| SRR2967015 | Control (Tissue:root) | 2.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.944 |
| SRR8749028 | MeJA induced 9h | 0.076 |
| SRR8749029 | MeJA induced 9h | 0.739 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.134 |
| SRR8749032 | Uninduced | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.111 |
| SRR8400027 | Control-Root | 0.056 |