Gene detail information of Glyur000677s00026180.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51140.1 | 4.00E-64 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_007131988.1 | 0 | hypothetical protein PHAVU_011G057400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C690|BH122_ARATH | 3.00E-76 | Transcription factor bHLH122 |
| trEMBL | tr|V7AEH4|V7AEH4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03982.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00677 | 71478 | 75219 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000677s00026180.1 | PF00010.21 | HLH | 360 | 405 | 3.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.803 |
| SRR1783600 | control | 36.940 |
| SRR1783602 | moderate drought stress | 53.154 |
| SRR1811619 | moderate drought stress | 53.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.905 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.670 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 54.325 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 52.587 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.259 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 46.725 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.716 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 39.718 |
| SRR2868004 | Drought Stress(Tissue:root) | 36.397 |
| SRR2967015 | Control (Tissue:root) | 34.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.343 |
| SRR9715740 | Leave | 15.735 |
| SRR9715741 | Leave | 21.753 |
| SRR9715739 | Root | 4.008 |
| SRR9715742 | Root | 26.708 |
| SRR9715743 | Root | 22.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.426 |
| SRR8749028 | MeJA induced 9h | 48.608 |
| SRR8749029 | MeJA induced 9h | 61.187 |
| SRR8749030 | Uninduced | 25.454 |
| SRR8749031 | Uninduced | 31.352 |
| SRR8749032 | Uninduced | 24.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 46.163 |
| SRR8400027 | Control-Root | 41.792 |