Gene detail information of Glyur000678s00024762.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G59750.10DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
NRXP_003547454.10PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like isoform X1 [Glycine max]
COGYP_003709448.13.00E-1573,4-dihydroxy-2-butanone 4-phosphate synthase [Waddlia chondrophila WSU 86-1044]
Swissprottr|Q9FN89|RIBA3_ARATH0GTP cyclohydrolase-2 (Precursor)
trEMBLtr|K7M9H6|K7M9H6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G04680.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006784175944689+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14652ribBA EC:4.1.99.12 3.5.4.25 Riboflavin metabolism map00740


Gene Ontology

biological_process

GO:0009231  riboflavin biosynthetic process


molecular_function

GO:0003935  GTP cyclohydrolase II activity

GO:0008686  3,4-dihydroxy-2-butanone-4-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000678s00024762.1PF00926.14DHBP_synthase1193151.00E-66
Glyur000678s00024762.1PF00925.15GTP_cyclohydro23224901.20E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.112
SRR1783600control0.200
SRR1783602moderate drought stress0.203
SRR1811619moderate drought stress0.135

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.332
DRR006520Root Summer glycyrrhizin high producing strain0.327
DRR006521Root Winter glycyrrhizin high producing strain0.683
DRR006522Root Winter glycyrrhizin high producing strain0.951
DRR006523Root Summer glycyrrhizin low producing strain0.198
DRR006524Root Summer glycyrrhizin low producing strain0.205
DRR006525Leaf Summer glycyrrhizin high producing strain5.158
DRR006526Leaf Summer glycyrrhizin high producing strain5.142

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.278
SRR2868004Drought Stress(Tissue:root)3.047
SRR2967015Control (Tissue:root)1.952

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.823
SRR9715740Leave18.164
SRR9715741Leave11.189
SRR9715739Root0.021
SRR9715742Root0.505
SRR9715743Root0.140

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.743
SRR8749028MeJA induced 9h3.762
SRR8749029MeJA induced 9h2.290
SRR8749030Uninduced2.014
SRR8749031Uninduced0.686
SRR8749032Uninduced2.178

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.571
SRR8400027Control-Root0.873

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved