Gene detail information of Glyur000678s00024765.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28690.1 | 2.00E-18 | Protein of unknown function (DUF1635) |
| NR | XP_004487039.1 | 2.17E-98 | PREDICTED: uncharacterized protein LOC101490424 [Cicer arietinum] |
| Swissprot | tr|Q5EAE9|ATL43_ARATH | 4.00E-19 | RING-H2 finger protein ATL43 (Precursor) |
| trEMBL | tr|G7JTP0|G7JTP0_MEDTR | 2.00E-88 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES88809.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00678 | 49761 | 53420 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000678s00024765.1 | PF07795.6 | DUF1635 | 14 | 227 | 1.10E-31 |
| Glyur000678s00024765.1 | PF13639.1 | zf-RING_2 | 377 | 420 | 2.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.770 |
| SRR1783600 | control | 4.982 |
| SRR1783602 | moderate drought stress | 4.207 |
| SRR1811619 | moderate drought stress | 4.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.742 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.603 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.940 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.639 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.076 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.289 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.034 |
| SRR2967015 | Control (Tissue:root) | 3.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.333 |
| SRR9715740 | Leave | 2.875 |
| SRR9715741 | Leave | 3.016 |
| SRR9715739 | Root | 1.618 |
| SRR9715742 | Root | 1.860 |
| SRR9715743 | Root | 0.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.121 |
| SRR8749028 | MeJA induced 9h | 0.254 |
| SRR8749029 | MeJA induced 9h | 0.124 |
| SRR8749030 | Uninduced | 2.300 |
| SRR8749031 | Uninduced | 0.712 |
| SRR8749032 | Uninduced | 0.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.829 |
| SRR8400027 | Control-Root | 6.374 |