Gene detail information of Glyur000678s00024769.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46130.16.00E-64myb domain protein 48
NRAES67577.21.22E-107myb transcription factor [Medicago truncatula]
Swissprottr|Q9LX82|MYB48_ARATH6.00E-79Transcription factor MYB48
trEMBLtr|G7IHL4|G7IHL4_MEDTR5.00E-108Myb transcription factor {ECO:0000313|EMBL:AES67577.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006787357874621-


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB
EAR motif-containing ProteinsMYB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000678s00024769.1PF00249.26Myb_DNA-binding9562.50E-14
Glyur000678s00024769.1PF00249.26Myb_DNA-binding621074.40E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control91.765
SRR1783600control91.694
SRR1783602moderate drought stress228.024
SRR1811619moderate drought stress232.108

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain52.487
DRR006520Root Summer glycyrrhizin high producing strain55.244
DRR006521Root Winter glycyrrhizin high producing strain11.612
DRR006522Root Winter glycyrrhizin high producing strain12.593
DRR006523Root Summer glycyrrhizin low producing strain99.536
DRR006524Root Summer glycyrrhizin low producing strain103.055
DRR006525Leaf Summer glycyrrhizin high producing strain64.822
DRR006526Leaf Summer glycyrrhizin high producing strain64.711

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)335.557
SRR2868004Drought Stress(Tissue:root)630.656
SRR2967015Control (Tissue:root)476.429

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave128.790
SRR9715740Leave220.509
SRR9715741Leave285.445
SRR9715739Root26.175
SRR9715742Root72.913
SRR9715743Root55.026

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.189
SRR8749028MeJA induced 9h20.196
SRR8749029MeJA induced 9h15.138
SRR8749030Uninduced20.447
SRR8749031Uninduced2.076
SRR8749032Uninduced10.011

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root528.079
SRR8400027Control-Root294.963

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved