Gene detail information of Glyur000678s00024774.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46080.11.00E-21C2H2-type zinc finger family protein
NRXP_003547427.17.69E-52PREDICTED: zinc finger protein ZAT11 [Glycine max]
Swissprottr|Q42410|ZAT12_ARATH2.00E-27Zinc finger protein ZAT12
trEMBLtr|Q4FH86|Q4FH86_SOYBN3.00E-52Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G04570.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00678107744108253+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2
EAR motif-containing ProteinsC2H2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000678s00024774.1PF13912.1zf-C2H2_637601.20E-07
Glyur000678s00024774.1PF13912.1zf-C2H2_6811051.10E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.014
SRR1783600control8.378
SRR1783602moderate drought stress5.196
SRR1811619moderate drought stress5.655

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain59.726
DRR006520Root Summer glycyrrhizin high producing strain58.314
DRR006521Root Winter glycyrrhizin high producing strain0.615
DRR006522Root Winter glycyrrhizin high producing strain0.854
DRR006523Root Summer glycyrrhizin low producing strain275.349
DRR006524Root Summer glycyrrhizin low producing strain277.018
DRR006525Leaf Summer glycyrrhizin high producing strain22.697
DRR006526Leaf Summer glycyrrhizin high producing strain19.738

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.469
SRR2868004Drought Stress(Tissue:root)2.366
SRR2967015Control (Tissue:root)17.873

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave243.934
SRR9715740Leave312.530
SRR9715741Leave293.569
SRR9715739Root154.236
SRR9715742Root187.261
SRR9715743Root163.450

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1072.176
SRR8749028MeJA induced 9h1009.233
SRR8749029MeJA induced 9h867.573
SRR8749030Uninduced526.727
SRR8749031Uninduced53.839
SRR8749032Uninduced169.857

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.674
SRR8400027Control-Root8.175

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved