Gene detail information of Glyur000680s00022883.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G79500.41.00E-150Aldolase-type TIM barrel family protein
NRAFK43441.10unknown [Lotus japonicus]
COGYP_004862459.12.00E-973-deoxy-7-phosphoheptulonate synthase [Candidatus Chloracidobacterium thermophilum B]
Swissprottr|O50044|KDSA_PEA02-dehydro-3-deoxyphosphooctonate aldolase
trEMBLtr|I3ST49|I3ST49_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK43441.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006807606382300+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01627kdsA EC:2.5.1.55 Lipopolysaccharide biosynthesis map00540


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0008676  3-deoxy-8-phosphooctulonate synthase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000680s00022883.1PF00793.15DAHP_synth_1142731.30E-83


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.709
SRR1783600control19.396
SRR1783602moderate drought stress12.737
SRR1811619moderate drought stress12.702

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.698
DRR006520Root Summer glycyrrhizin high producing strain32.545
DRR006521Root Winter glycyrrhizin high producing strain7.425
DRR006522Root Winter glycyrrhizin high producing strain6.852
DRR006523Root Summer glycyrrhizin low producing strain17.497
DRR006524Root Summer glycyrrhizin low producing strain18.380
DRR006525Leaf Summer glycyrrhizin high producing strain7.658
DRR006526Leaf Summer glycyrrhizin high producing strain7.749

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.408
SRR2868004Drought Stress(Tissue:root)17.894
SRR2967015Control (Tissue:root)19.353

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.878
SRR9715740Leave7.716
SRR9715741Leave5.485
SRR9715739Root14.567
SRR9715742Root13.509
SRR9715743Root13.142

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.083
SRR8749028MeJA induced 9h13.825
SRR8749029MeJA induced 9h17.013
SRR8749030Uninduced2.177
SRR8749031Uninduced1.250
SRR8749032Uninduced2.516

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.487
SRR8400027Control-Root42.997

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved