Gene detail information of Glyur000681s00027306.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27980.1 | 2.00E-60 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_004486592.1 | 9.87E-169 | PREDICTED: pectinesterase 3-like [Cicer arietinum] |
| COG | YP_003091437.1 | 7.00E-41 | pectinesterase [Pedobacter heparinus DSM 2366] |
| Swissprot | tr|Q3EAY9|PME30_ARATH | 2.00E-70 | Probable pectinesterase 30 (Precursor) |
| trEMBL | tr|G7ZYW7|G7ZYW7_MEDTR | 2.00E-166 | Pectinesterase {ECO:0000313|EMBL:AES84405.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00681 | 45179 | 49507 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000681s00027306.1 | PF01095.14 | Pectinesterase | 25 | 298 | 2.00E-81 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.098 |
| SRR1783600 | control | 6.908 |
| SRR1783602 | moderate drought stress | 4.795 |
| SRR1811619 | moderate drought stress | 4.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.397 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.384 |
| SRR2967015 | Control (Tissue:root) | 19.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 29.988 |
| SRR9715742 | Root | 6.816 |
| SRR9715743 | Root | 9.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.175 |
| SRR8749028 | MeJA induced 9h | 40.097 |
| SRR8749029 | MeJA induced 9h | 7.244 |
| SRR8749030 | Uninduced | 2.931 |
| SRR8749031 | Uninduced | 1.705 |
| SRR8749032 | Uninduced | 5.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.068 |
| SRR8400027 | Control-Root | 30.060 |