Gene detail information of Glyur000682s00024309.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76410.12.00E-36RING/U-box superfamily protein
NRXP_004509462.12.24E-100PREDICTED: RING-H2 finger protein ATL80-like [Cicer arietinum]
Swissprottr|Q8LC69|ATL8_ARATH1.00E-58RING-H2 finger protein ATL8
trEMBLtr|G7L8N9|G7L8N9_MEDTR2.00E-91Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313|EMBL:AET03573.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0068249115564+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000682s00024309.1PF13639.1zf-RING_21041476.20E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.900
SRR1783600control9.270
SRR1783602moderate drought stress24.596
SRR1811619moderate drought stress22.638

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.960
DRR006520Root Summer glycyrrhizin high producing strain52.961
DRR006521Root Winter glycyrrhizin high producing strain34.888
DRR006522Root Winter glycyrrhizin high producing strain34.654
DRR006523Root Summer glycyrrhizin low producing strain17.670
DRR006524Root Summer glycyrrhizin low producing strain20.312
DRR006525Leaf Summer glycyrrhizin high producing strain3.290
DRR006526Leaf Summer glycyrrhizin high producing strain4.384

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.073
SRR2868004Drought Stress(Tissue:root)2.571
SRR2967015Control (Tissue:root)12.308

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.062
SRR9715740Leave1.447
SRR9715741Leave0.849
SRR9715739Root7.416
SRR9715742Root4.618
SRR9715743Root5.798

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.492
SRR8749028MeJA induced 9h8.998
SRR8749029MeJA induced 9h7.451
SRR8749030Uninduced0.432
SRR8749031Uninduced0.101
SRR8749032Uninduced2.276

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.144
SRR8400027Control-Root1.908

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved