Gene detail information of Glyur000682s00024324.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76490.10hydroxy methylglutaryl CoA reductase 1
NRAEH58930.10HMG-CoA reductase [Glycyrrhiza uralensis]
COGNP_126055.13.00E-1163-hydroxy-3-methylglutaryl-coenzyme A reductase [Pyrococcus abyssi GE5]
Swissprottr|P48020|HMDH1_SOLTU03-hydroxy-3-methylglutaryl-coenzyme A reductase 1
trEMBLtr|F8TYQ6|F8TYQ6_GLYUR03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006829426197727+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00021HMGCR EC:1.1.1.34 Terpenoid backbone biosynthesis map00900
AMPK signaling pathwaymap04152
Bile secretionmap04976


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0015936  coenzyme A metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004420  hydroxymethylglutaryl-CoA reductase (NADPH) activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0050661  NADP binding

GO:0050662  coenzyme binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000682s00024324.1PF00368.13HMG-CoA_red1855454.30E-151


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control175.136
SRR1783600control175.898
SRR1783602moderate drought stress203.949
SRR1811619moderate drought stress200.793

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain138.891
DRR006520Root Summer glycyrrhizin high producing strain136.102
DRR006521Root Winter glycyrrhizin high producing strain93.027
DRR006522Root Winter glycyrrhizin high producing strain88.661
DRR006523Root Summer glycyrrhizin low producing strain87.320
DRR006524Root Summer glycyrrhizin low producing strain86.846
DRR006525Leaf Summer glycyrrhizin high producing strain12.706
DRR006526Leaf Summer glycyrrhizin high producing strain12.077

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)217.816
SRR2868004Drought Stress(Tissue:root)122.172
SRR2967015Control (Tissue:root)148.466

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.497
SRR9715740Leave19.718
SRR9715741Leave25.628
SRR9715739Root170.472
SRR9715742Root267.691
SRR9715743Root244.475

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.021
SRR8749028MeJA induced 9h22.033
SRR8749029MeJA induced 9h13.009
SRR8749030Uninduced8.749
SRR8749031Uninduced4.830
SRR8749032Uninduced12.791

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root305.755
SRR8400027Control-Root215.807

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved