Gene detail information of Glyur000682s00024325.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT2G17420.1 | 6.00E-132 | NADPH-dependent thioredoxin reductase A |
NR | XP_004509471.1 | 0 | PREDICTED: thioredoxin reductase 2-like [Cicer arietinum] |
COG | YP_008712.1 | 9.00E-131 | thioredoxin-disulfide reductase 2 [Candidatus Protochlamydia amoebophila UWE25] |
Swissprot | tr|Q39242|TRXB2_ARATH | 0 | Thioredoxin reductase 2 |
trEMBL | tr|I1MMU1|I1MMU1_SOYBN | 0 | Thioredoxin reductase {ECO:0000256|RuleBase:RU003881} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00682 | 99510 | 102965 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K00384 | trxB | EC:1.8.1.9 | Pyrimidine metabolism | map00240 |
Selenocompound metabolism | map00450 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000682s00024325.1 | PF07992.9 | Pyr_redox_2 | 84 | 376 | 3.30E-25 |
Glyur000682s00024325.1 | PF00070.22 | Pyr_redox | 236 | 301 | 1.80E-15 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 12.357 |
SRR1783600 | control | 12.611 |
SRR1783602 | moderate drought stress | 9.774 |
SRR1811619 | moderate drought stress | 10.143 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 10.302 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 10.649 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 11.438 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 11.218 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 20.067 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 20.093 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.975 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.960 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 12.426 |
SRR2868004 | Drought Stress(Tissue:root) | 10.025 |
SRR2967015 | Control (Tissue:root) | 8.777 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 5.937 |
SRR9715740 | Leave | 4.174 |
SRR9715741 | Leave | 4.654 |
SRR9715739 | Root | 15.281 |
SRR9715742 | Root | 13.624 |
SRR9715743 | Root | 11.035 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 15.578 |
SRR8749028 | MeJA induced 9h | 9.716 |
SRR8749029 | MeJA induced 9h | 10.035 |
SRR8749030 | Uninduced | 5.434 |
SRR8749031 | Uninduced | 3.607 |
SRR8749032 | Uninduced | 6.115 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 14.593 |
SRR8400027 | Control-Root | 15.238 |