Gene detail information of Glyur000683s00025143.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G30800.10helicase in vascular tissue and tapetum
NRXP_003518495.10PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max]
COGYP_005368855.19.00E-38ATP-dependent helicase [Corallococcus coralloides DSM 2259]
Swissprottr|Q38953|DHX8_ARATH5.00E-41Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|K7KB99|K7KB99_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G45220.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006831892632874+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14442DHX36, RHAU EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005515  protein binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000683s00025143.1PF00270.24DEAD4516126.30E-08
Glyur000683s00025143.1PF00271.26Helicase_C8359222.50E-06
Glyur000683s00025143.1PF04408.18HA298610674.50E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.002
SRR1783600control13.150
SRR1783602moderate drought stress15.310
SRR1811619moderate drought stress15.354

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.142
DRR006520Root Summer glycyrrhizin high producing strain17.017
DRR006521Root Winter glycyrrhizin high producing strain12.271
DRR006522Root Winter glycyrrhizin high producing strain11.965
DRR006523Root Summer glycyrrhizin low producing strain14.502
DRR006524Root Summer glycyrrhizin low producing strain14.634
DRR006525Leaf Summer glycyrrhizin high producing strain8.873
DRR006526Leaf Summer glycyrrhizin high producing strain8.745

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.732
SRR2868004Drought Stress(Tissue:root)25.830
SRR2967015Control (Tissue:root)25.524

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.686
SRR9715740Leave16.393
SRR9715741Leave18.239
SRR9715739Root6.704
SRR9715742Root30.112
SRR9715743Root26.249

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.137
SRR8749028MeJA induced 9h22.711
SRR8749029MeJA induced 9h5.764
SRR8749030Uninduced8.979
SRR8749031Uninduced5.214
SRR8749032Uninduced4.381

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.007
SRR8400027Control-Root25.645

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved