Gene detail information of Glyur000683s00025150.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40260.1 | 3.00E-22 | Homeodomain-like superfamily protein |
| NR | KEH33664.1 | 4.01E-80 | myb-like DNA-binding domain, shaqkyf class protein [Medicago truncatula] |
| Swissprot | tr|Q700D9|MYBF_ARATH | 3.00E-24 | Putative Myb family transcription factor At1g14600 |
| trEMBL | tr|A0A072UUY9|A0A072UUY9_MEDTR | 1.00E-80 | Myb-like DNA-binding domain, shaqkyf class protein {ECO:0000313|EMBL:KEH33664.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00683 | 64329 | 68359 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | G2-like |
| Carbohydrate-Active enzymes Family | GT77 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000683s00025150.1 | PF00249.26 | Myb_DNA-binding | 22 | 73 | 4.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.774 |
| SRR1783600 | control | 3.151 |
| SRR1783602 | moderate drought stress | 4.408 |
| SRR1811619 | moderate drought stress | 5.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.192 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.071 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.149 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.093 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.123 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.523 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.020 |
| SRR2967015 | Control (Tissue:root) | 6.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.676 |
| SRR9715740 | Leave | 11.722 |
| SRR9715741 | Leave | 25.230 |
| SRR9715739 | Root | 0.234 |
| SRR9715742 | Root | 0.574 |
| SRR9715743 | Root | 0.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 92.036 |
| SRR8749028 | MeJA induced 9h | 266.637 |
| SRR8749029 | MeJA induced 9h | 190.864 |
| SRR8749030 | Uninduced | 282.670 |
| SRR8749031 | Uninduced | 387.241 |
| SRR8749032 | Uninduced | 373.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.647 |
| SRR8400027 | Control-Root | 5.006 |