Gene detail information of Glyur000683s00025152.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07900.1 | 1.00E-22 | Mitochondrial transcription termination factor family protein |
| NR | XP_003530716.2 | 8.62E-109 | PREDICTED: uncharacterized protein LOC100818835 [Glycine max] |
| trEMBL | tr|V7BMI8|V7BMI8_PHAVU | 3.00E-72 | Uncharacterized protein {ECO:0000313|EMBL:ESW18248.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00683 | 78046 | 83907 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | mTERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000683s00025152.1 | PF02536.9 | mTERF | 12 | 94 | 1.60E-08 |
| Glyur000683s00025152.1 | PF02536.9 | mTERF | 194 | 319 | 8.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.057 |
| SRR1783600 | control | 3.876 |
| SRR1783602 | moderate drought stress | 4.192 |
| SRR1811619 | moderate drought stress | 3.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.217 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.659 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.047 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.003 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.327 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.116 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.824 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.246 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.177 |
| SRR2967015 | Control (Tissue:root) | 5.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.462 |
| SRR9715740 | Leave | 6.687 |
| SRR9715741 | Leave | 4.866 |
| SRR9715739 | Root | 3.685 |
| SRR9715742 | Root | 5.679 |
| SRR9715743 | Root | 4.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.001 |
| SRR8749028 | MeJA induced 9h | 2.194 |
| SRR8749029 | MeJA induced 9h | 0.839 |
| SRR8749030 | Uninduced | 0.332 |
| SRR8749031 | Uninduced | 0.116 |
| SRR8749032 | Uninduced | 0.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.380 |
| SRR8400027 | Control-Root | 9.101 |