Gene detail information of Glyur000683s00025154.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G17230.26.00E-138PHYTOENE SYNTHASE
NRNP_001239926.10uncharacterized protein LOC100776503 [Glycine max]
COGYP_007121895.19.00E-97phytoene/squalene synthetase [Microcoleus sp. PCC 7113]
Swissprottr|Q9SSU8|PSY_DAUCA4.00E-180Phytoene synthase, chloroplastic (Precursor)
trEMBLtr|C6T9N7|C6T9N7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G13700.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006838568796644-


Gene family

Gene familysubfamily
Transcription Factors FamilymTERF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02291crtB EC:2.5.1.32 2.5.1.99 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009058  biosynthetic process


cellular_component

GO:0005739  mitochondrion


molecular_function

GO:0003690  double-stranded DNA binding

GO:0016740  transferase activity

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000683s00025154.1PF00494.14SQS_PSY1183561.00E-57
Glyur000683s00025154.1PF02536.9mTERF3954989.10E-11
Glyur000683s00025154.1PF02536.9mTERF4675634.40E-10
Glyur000683s00025154.1PF00494.14SQS_PSY5857373.10E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.457
SRR1783600control1.456
SRR1783602moderate drought stress1.085
SRR1811619moderate drought stress1.021

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.162
DRR006520Root Summer glycyrrhizin high producing strain3.056
DRR006521Root Winter glycyrrhizin high producing strain1.328
DRR006522Root Winter glycyrrhizin high producing strain1.347
DRR006523Root Summer glycyrrhizin low producing strain1.887
DRR006524Root Summer glycyrrhizin low producing strain1.768
DRR006525Leaf Summer glycyrrhizin high producing strain46.338
DRR006526Leaf Summer glycyrrhizin high producing strain46.411

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.047
SRR2868004Drought Stress(Tissue:root)4.925
SRR2967015Control (Tissue:root)3.757

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.699
SRR9715740Leave22.189
SRR9715741Leave15.486
SRR9715739Root1.270
SRR9715742Root1.757
SRR9715743Root1.362

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.879
SRR8749028MeJA induced 9h5.745
SRR8749029MeJA induced 9h3.675
SRR8749030Uninduced7.543
SRR8749031Uninduced3.485
SRR8749032Uninduced7.690

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.497
SRR8400027Control-Root3.468

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved