Gene detail information of Glyur000686s00030152.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76490.19.00E-10hydroxy methylglutaryl CoA reductase 1
NRXP_002275827.19.24E-12PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Vitis vinifera]
Swissprottr|P29057|HMDH1_HEVBR2.00E-113-hydroxy-3-methylglutaryl-coenzyme A reductase 1
trEMBLtr|F6I6W1|F6I6W1_VITVI3.00E-123-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006861107513061+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00021HMGCR EC:1.1.1.34 Terpenoid backbone biosynthesis map00900
AMPK signaling pathwaymap04152
Bile secretionmap04976


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.051
SRR1783600control0.231
SRR1783602moderate drought stress0.237
SRR1811619moderate drought stress0.403

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.510
DRR006520Root Summer glycyrrhizin high producing strain0.505
DRR006521Root Winter glycyrrhizin high producing strain2.074
DRR006522Root Winter glycyrrhizin high producing strain2.565
DRR006523Root Summer glycyrrhizin low producing strain1.513
DRR006524Root Summer glycyrrhizin low producing strain0.346
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.618
SRR2868004Drought Stress(Tissue:root)0.596
SRR2967015Control (Tissue:root)0.437

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.001
SRR9715741Leave0.000
SRR9715739Root0.038
SRR9715742Root0.000
SRR9715743Root0.151

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.280
SRR8749028MeJA induced 9h0.252
SRR8749029MeJA induced 9h0.073
SRR8749030Uninduced0.129
SRR8749031Uninduced0.000
SRR8749032Uninduced0.134

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.157
SRR8400027Control-Root0.044