Gene detail information of Glyur000686s00030152.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76490.1 | 9.00E-10 | hydroxy methylglutaryl CoA reductase 1 |
| NR | XP_002275827.1 | 9.24E-12 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Vitis vinifera] |
| Swissprot | tr|P29057|HMDH1_HEVBR | 2.00E-11 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 |
| trEMBL | tr|F6I6W1|F6I6W1_VITVI | 3.00E-12 | 3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00686 | 11075 | 13061 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00021 | HMGCR | EC:1.1.1.34 | Terpenoid backbone biosynthesis | map00900 |
| AMPK signaling pathway | map04152 | |||
| Bile secretion | map04976 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.051 |
| SRR1783600 | control | 0.231 |
| SRR1783602 | moderate drought stress | 0.237 |
| SRR1811619 | moderate drought stress | 0.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.510 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.505 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.074 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.565 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.513 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.346 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.618 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.596 |
| SRR2967015 | Control (Tissue:root) | 0.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.001 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.038 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.280 |
| SRR8749028 | MeJA induced 9h | 0.252 |
| SRR8749029 | MeJA induced 9h | 0.073 |
| SRR8749030 | Uninduced | 0.129 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.157 |
| SRR8400027 | Control-Root | 0.044 |