Gene detail information of Glyur000686s00030155.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15610.1 | 5.00E-161 | Transducin/WD40 repeat-like superfamily protein |
| NR | AFK46987.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_003167824.1 | 3.00E-33 | WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] |
| Swissprot | tr|Q38884|EIF3I_ARATH | 5.00E-34 | Eukaryotic translation initiation factor 3 subunit I {ECO:0000255|HAMAP-Rule:MF_03008} |
| trEMBL | tr|I3T395|I3T395_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK46987.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00686 | 46464 | 53947 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000686s00030155.1 | PF00400.27 | WD40 | 54 | 89 | 7.70E-06 |
| Glyur000686s00030155.1 | PF00400.27 | WD40 | 100 | 130 | 0.0073 |
| Glyur000686s00030155.1 | PF00400.27 | WD40 | 264 | 297 | 5.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 63.907 |
| SRR1783600 | control | 63.950 |
| SRR1783602 | moderate drought stress | 68.458 |
| SRR1811619 | moderate drought stress | 68.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 107.543 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 107.182 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 133.574 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 129.960 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 89.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 88.732 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 48.072 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 48.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 75.325 |
| SRR2868004 | Drought Stress(Tissue:root) | 69.178 |
| SRR2967015 | Control (Tissue:root) | 74.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 52.057 |
| SRR9715740 | Leave | 69.156 |
| SRR9715741 | Leave | 64.360 |
| SRR9715739 | Root | 63.078 |
| SRR9715742 | Root | 62.949 |
| SRR9715743 | Root | 62.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 88.277 |
| SRR8749028 | MeJA induced 9h | 89.431 |
| SRR8749029 | MeJA induced 9h | 62.450 |
| SRR8749030 | Uninduced | 93.847 |
| SRR8749031 | Uninduced | 44.594 |
| SRR8749032 | Uninduced | 61.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 83.844 |
| SRR8400027 | Control-Root | 75.656 |