Gene detail information of Glyur000686s00030156.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26640.103-ketoacyl-CoA synthase 11
NRBAF98214.10CM0216.300.nc [Lotus japonicus]
COGNP_285649.18.00E-16chalcone synthase [Deinococcus radiodurans R1]
Swissprottr|O48780|KCS11_ARATH03-ketoacyl-CoA synthase 11
trEMBLtr|B0BLH8|B0BLH8_LOTJA03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006865525858415-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15397KCS EC:2.3.1.199 Fatty acid elongation map00062


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0008610  lipid biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000686s00030156.1PF08392.7FAE1_CUT1_RppA1184071.10E-144
Glyur000686s00030156.1PF08541.5ACP_syn_III_C4245044.00E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.223
SRR1783600control8.286
SRR1783602moderate drought stress7.078
SRR1811619moderate drought stress6.943

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain56.830
DRR006520Root Summer glycyrrhizin high producing strain56.547
DRR006521Root Winter glycyrrhizin high producing strain0.633
DRR006522Root Winter glycyrrhizin high producing strain0.619
DRR006523Root Summer glycyrrhizin low producing strain235.046
DRR006524Root Summer glycyrrhizin low producing strain233.578
DRR006525Leaf Summer glycyrrhizin high producing strain85.095
DRR006526Leaf Summer glycyrrhizin high producing strain85.248

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)59.602
SRR2868004Drought Stress(Tissue:root)122.354
SRR2967015Control (Tissue:root)113.572

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave307.121
SRR9715740Leave427.371
SRR9715741Leave422.505
SRR9715739Root301.664
SRR9715742Root279.126
SRR9715743Root272.933

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h154.562
SRR8749028MeJA induced 9h166.505
SRR8749029MeJA induced 9h89.736
SRR8749030Uninduced608.002
SRR8749031Uninduced185.142
SRR8749032Uninduced255.512

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.388
SRR8400027Control-Root112.161

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved