Gene detail information of Glyur000688s00027135.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04760.1 | 4.00E-33 | Duplicated homeodomain-like superfamily protein |
| NR | XP_006485458.1 | 3.21E-44 | PREDICTED: transcription factor DIVARICATA-like [Citrus sinensis] |
| Swissprot | tr|Q8S9H7|DIV_ANTMA | 4.00E-36 | Transcription factor DIVARICATA |
| trEMBL | tr|A0A078CY08|A0A078CY08_BRANA | 7.00E-44 | BnaC03g01730D protein {ECO:0000313|EMBL:CDX80919.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00688 | 115731 | 129030 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000688s00027135.1 | PF00249.26 | Myb_DNA-binding | 92 | 138 | 1.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.246 |
| SRR1783600 | control | 0.256 |
| SRR1783602 | moderate drought stress | 0.455 |
| SRR1811619 | moderate drought stress | 0.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.305 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.517 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.243 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.472 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.155 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.116 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.071 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.832 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.018 |
| SRR2967015 | Control (Tissue:root) | 0.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.280 |
| SRR9715740 | Leave | 0.643 |
| SRR9715741 | Leave | 0.359 |
| SRR9715739 | Root | 0.256 |
| SRR9715742 | Root | 0.139 |
| SRR9715743 | Root | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.504 |
| SRR8749028 | MeJA induced 9h | 0.237 |
| SRR8749029 | MeJA induced 9h | 0.335 |
| SRR8749030 | Uninduced | 0.872 |
| SRR8749031 | Uninduced | 0.011 |
| SRR8749032 | Uninduced | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.923 |
| SRR8400027 | Control-Root | 0.740 |