Gene detail information of Glyur000690s00025172.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35740.1 | 1.00E-37 | Carbohydrate-binding X8 domain superfamily protein |
| NR | XP_003549517.1 | 4.18E-68 | PREDICTED: glucan endo-1,3-beta-glucosidase 12-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8VYE5|E1312_ARATH | 9.00E-30 | Glucan endo-1,3-beta-glucosidase 12 (Precursor) |
| trEMBL | tr|I1MQZ6|I1MQZ6_SOYBN | 2.00E-68 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00690 | 69104 | 70213 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000690s00025172.1 | PF07983.8 | X8 | 24 | 94 | 2.90E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.591 |
| SRR1783600 | control | 0.569 |
| SRR1783602 | moderate drought stress | 1.071 |
| SRR1811619 | moderate drought stress | 1.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.872 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.931 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.192 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.017 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.869 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.761 |
| SRR2967015 | Control (Tissue:root) | 9.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.218 |
| SRR9715740 | Leave | 0.014 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.254 |
| SRR9715742 | Root | 0.549 |
| SRR9715743 | Root | 0.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.353 |
| SRR8749028 | MeJA induced 9h | 0.019 |
| SRR8749029 | MeJA induced 9h | 0.076 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.499 |
| SRR8400027 | Control-Root | 3.436 |