Gene detail information of Glyur000691s00031272.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G01850.22.00E-87Aldolase-type TIM barrel family protein
NRNP_001236780.15.61E-123uncharacterized protein LOC100527490 [Glycine max]
COGYP_003475431.18.00E-49ribulose-phosphate 3-epimerase [Clostridiales genomosp. BVAB3 str. UPII9-5]
Swissprottr|Q9SE42|RPE1_ORYSJ1.00E-111Ribulose-phosphate 3-epimerase, cytoplasmic isoform
trEMBLtr|C6T4H4|C6T4H4_SOYBN2.00E-123Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006919177495816-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01783rpe, RPE EC:5.1.3.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Pentose and glucuronate interconversionsmap00040
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016857  racemase and epimerase activity, acting on carbohydrates and derivatives


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000691s00031272.1PF00834.14Ribul_P_3_epim201852.10E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.053
SRR1783600control14.162
SRR1783602moderate drought stress11.782
SRR1811619moderate drought stress11.646

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.085
DRR006520Root Summer glycyrrhizin high producing strain21.944
DRR006521Root Winter glycyrrhizin high producing strain17.753
DRR006522Root Winter glycyrrhizin high producing strain17.230
DRR006523Root Summer glycyrrhizin low producing strain18.011
DRR006524Root Summer glycyrrhizin low producing strain18.081
DRR006525Leaf Summer glycyrrhizin high producing strain11.631
DRR006526Leaf Summer glycyrrhizin high producing strain11.620

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.610
SRR2868004Drought Stress(Tissue:root)20.379
SRR2967015Control (Tissue:root)21.632

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.062
SRR9715740Leave12.895
SRR9715741Leave14.628
SRR9715739Root9.260
SRR9715742Root18.331
SRR9715743Root15.008

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.724
SRR8749028MeJA induced 9h15.445
SRR8749029MeJA induced 9h21.284
SRR8749030Uninduced20.889
SRR8749031Uninduced25.045
SRR8749032Uninduced20.837

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.313
SRR8400027Control-Root22.145

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved