Gene detail information of Glyur000692s00016538.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G67320.20DNA primase, large subunit family
NRXP_004504396.10PREDICTED: probable DNA primase large subunit-like isoform X2 [Cicer arietinum]
COGYP_007312256.11.00E-06DNA primase, large subunit [Methanomethylovorans hollandica DSM 15978]
Swissprottr|Q84WJ2|PRI2_ARATH0Probable DNA primase large subunit
trEMBLtr|G7LHA9|G7LHA9_MEDTR0DNA primase large subunit, putative {ECO:0000313|EMBL:AET04972.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006921404320191-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02685PRI2 EC:2.7.7.- Purine metabolism map00230
Pyrimidine metabolismmap00240
DNA replicationmap03030


Gene Ontology

biological_process

GO:0006269  DNA replication, synthesis of RNA primer


molecular_function

GO:0003896  DNA primase activity

GO:0016779  nucleotidyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000692s00016538.2PF04104.9DNA_primase_lrg1784433.50E-87


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.402
SRR1783600control9.543
SRR1783602moderate drought stress5.274
SRR1811619moderate drought stress5.510

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.670
DRR006520Root Summer glycyrrhizin high producing strain8.126
DRR006521Root Winter glycyrrhizin high producing strain7.020
DRR006522Root Winter glycyrrhizin high producing strain6.692
DRR006523Root Summer glycyrrhizin low producing strain14.312
DRR006524Root Summer glycyrrhizin low producing strain14.608
DRR006525Leaf Summer glycyrrhizin high producing strain0.650
DRR006526Leaf Summer glycyrrhizin high producing strain0.625

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.469
SRR2868004Drought Stress(Tissue:root)8.845
SRR2967015Control (Tissue:root)10.182

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.617
SRR9715740Leave0.327
SRR9715741Leave0.870
SRR9715739Root2.044
SRR9715742Root3.449
SRR9715743Root3.828

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.525
SRR8749028MeJA induced 9h13.411
SRR8749029MeJA induced 9h17.325
SRR8749030Uninduced0.848
SRR8749031Uninduced1.050
SRR8749032Uninduced0.957

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.409
SRR8400027Control-Root12.486

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved