Gene detail information of Glyur000692s00016543.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34880.16.00E-119Amidase family protein
NRKEH20625.10amidase C869.01-like protein, putative [Medicago truncatula]
COGYP_003321515.16.00E-98Amidase [Sphaerobacter thermophilus DSM 20745]
Swissprottr|Q9LI77|GATA_ARATH1.00E-16Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor)
trEMBLtr|A0A072U458|A0A072U458_MEDTR0Amidase C869.01-like protein, putative {ECO:0000313|EMBL:KEH20625.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006923595138493-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01426E3.5.1.4, amiE EC:3.5.1.4 Arginine and proline metabolism map00330
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Aminobenzoate degradationmap00627
Styrene degradationmap00643


Gene Ontology

molecular_function

GO:0016884  carbon-nitrogen ligase activity, with glutamine as amido-N-donor



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000692s00016543.2PF01425.16Amidase571405.20E-14
Glyur000692s00016543.2PF01425.16Amidase1484053.40E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.417
SRR1783600control13.347
SRR1783602moderate drought stress23.245
SRR1811619moderate drought stress22.815

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain66.125
DRR006520Root Summer glycyrrhizin high producing strain66.206
DRR006521Root Winter glycyrrhizin high producing strain10.093
DRR006522Root Winter glycyrrhizin high producing strain9.686
DRR006523Root Summer glycyrrhizin low producing strain19.207
DRR006524Root Summer glycyrrhizin low producing strain19.163
DRR006525Leaf Summer glycyrrhizin high producing strain83.914
DRR006526Leaf Summer glycyrrhizin high producing strain83.850

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.410
SRR2868004Drought Stress(Tissue:root)20.883
SRR2967015Control (Tissue:root)62.787

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave47.648
SRR9715740Leave23.361
SRR9715741Leave22.178
SRR9715739Root7.338
SRR9715742Root58.361
SRR9715743Root50.177

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.375
SRR8749028MeJA induced 9h0.167
SRR8749029MeJA induced 9h0.239
SRR8749030Uninduced0.065
SRR8749031Uninduced0.015
SRR8749032Uninduced0.148

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root110.016
SRR8400027Control-Root101.262

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved