Gene detail information of Glyur000692s00016559.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G23730.13.00E-106xyloglucan endotransglucosylase/hydrolase 16
NRXP_003524918.11.44E-163PREDICTED: brassinosteroid-regulated protein BRU1 isoform X1 [Glycine max]
Swissprottr|P35694|XTH2_SOYBN4.00E-158Xyloglucan endotransglucosylase/hydrolase 2 {ECO:0000250|UniProtKB:Q38857} (Precursor)
trEMBLtr|I3S012|I3S012_LOTJA2.00E-163Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0069299706104048+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000692s00016559.2PF00722.16Glyco_hydro_16331381.20E-27
Glyur000692s00016559.2PF06955.7XET_C2122576.00E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control345.848
SRR1783600control348.049
SRR1783602moderate drought stress509.610
SRR1811619moderate drought stress505.936

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain157.905
DRR006520Root Summer glycyrrhizin high producing strain156.799
DRR006521Root Winter glycyrrhizin high producing strain11.347
DRR006522Root Winter glycyrrhizin high producing strain11.053
DRR006523Root Summer glycyrrhizin low producing strain214.665
DRR006524Root Summer glycyrrhizin low producing strain215.612
DRR006525Leaf Summer glycyrrhizin high producing strain36.461
DRR006526Leaf Summer glycyrrhizin high producing strain36.607

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)120.147
SRR2868004Drought Stress(Tissue:root)115.929
SRR2967015Control (Tissue:root)119.752

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave64.554
SRR9715740Leave49.589
SRR9715741Leave64.520
SRR9715739Root221.120
SRR9715742Root71.966
SRR9715743Root98.227

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.126
SRR8749028MeJA induced 9h9.768
SRR8749029MeJA induced 9h63.252
SRR8749030Uninduced12.987
SRR8749031Uninduced2.882
SRR8749032Uninduced149.196

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root102.098
SRR8400027Control-Root121.293

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved