Gene detail

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Gene detail information of Glyur000692s00016563.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23750.1	0	Leucine-rich repeat protein kinase family protein
NR	ABD96566.1	0	Rhg4-like receptor kinase II [Glycine max]
COG	YP_004775215.1	2.00E-30	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P43298\|TMK1_ARATH	0	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|I1K3R0\|I1K3R0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G28350.1}

Sequence

Transcript Sequence

>Glyur000692s00016563.1
ATGCTCCGAATCCCATTCTTCTTCTTCTTCTTCTTCTCCACCGTCATCATCGCCGCCGCGGCCGACGATGCTGCCGTCATGTCGAAGCTTCTCGAATCCCTAACACCGTCTCCCCCGGGGTGGTCTCCGTCGACCCCATTCTGCCAATGGGAGGGCATAAAGTGCGACTCCTCCTCCAACCGAGTGACCACCATAAGCCTAGCCTCCCATTCCCTCACCGGAACACTCCCCTCCGATCTCAACTCCCTCTCCCACCTCACCTCCCTCTCTCTGCAAGACAACTCCCTCACCGGCCCACTCCCTTCCCTCGCCAACCTCTCCTCCCTCCAAACCGCCTTCCTCGGCCGCAACAACTTCACCTCCGTCCCCACCGCCGCATTCTCCGGCCTCACCTCCCTCCAAACCCTCAGCCTCGGCAACAACCCAAGCCTCTCCCCATGGACCCTCCCCACCGAGTTGACTCAGTCCCCAAACCTCAACACCCTCGAACTCGGAACCGCAGGTGTCACCGGCAACCTACCCGACTTCTTCGACAAGTTCCCATCCCTCCAGAACGTTCGTCTCTCCTACAACAACCTCACCGGCGAACTCCCCCACTCCCTCGCCGCTTCATCAATCGAGTATCTCTGGCTCAACAACCAGGAAACCGGGTTAACAGGTAACATCGACGTGCTCTCCAACATGACGCAGTTGTCTCAGGTTTGGCTTCATAAGAACCAGTTCACCGGTCCCATTCCCGACCTGTCACAATGCGAGAGCCTCTTTGATTTGCAGCTCAGGGACAACCGGTTAACCGGTCTGGTTCCGGGTTCTCTAACGGGTCTCTCGAGTCTGAAGAATGTTTCTCTTGACAACAATGAGCTTCAGGGGCCATTGCCGGTGTTTGGTAAAGGTGTGAAAGTAACACTTGATGGGATCAATAGCTTTTGTCGTGACACACCTGGACCCTGCGATGCCAGGGTTATGGTTTTGCTTCAAATTGCTGAGGCATTTGGGTATCCTATTTTGTTAGCGGATTCGTGGAAAGGGAATGACCCTTGTCAGGGTTGGAGTTTTGTTGGGTGTAGTAGTGGGGGTAAGATTGTAAATGTGAATTTAGCGAAGAAGGGTTTGCAGGGGATCATTTCGCCGGCATTTGCCAATTTGACTGATTTGAGGAACTTGGATCTCAATGGGAATAATTTGACTGGTTCTATACCTGAGAGCTTGACCACTTTGTCTCAGCTTCAGACCCTTGATGTGTCTAACAACAACCTCTCTGGGGAGGTTCCGAAATTCTCACCAAAGGTGAAGTTGGTGACTGCGGGTAATGTTTTGCTTGGCCAAACTCCTGGTTCCGGAGGTGGAAAAACCTCTCCTTCTGTGGGGTCTCCACCCGATGGTGGAAGTCCCGGTGAATCGGGAAATGGTGGTGCTTCGTTGGCGCCCGGTTTGATTGCCGCTATAGTGATAATTGCTTTGTTTTTCGTCGTGGTGGTCTTGTTTGTGTTTTGCAAGTGTTATGCTAAAAACAGGCACAGGAGATTTGCTAGGGTTGATAATCCTGTAAATGGGAAAGGGAATGTTAAGCTTGATGTGATGAGTGTTTCTAATGGATACGGTGGTGTTCCGACTCCGAGCGAGTTGCAAAGCCAGAGCAGTGGAGATCATAGTGATCTTCATGTTTTCGAGGGTGGAAATGGAAATGCTGCCATTTCGATTCAGGTTCTTCGACAGGCGACAGACAATTTCTGCGAGGACAACATTTTAGGCAGGGGAGGGTTTGGAGTTGTTTACAAAGGGGAGTTGCCTGATGGGACTAAGATTGCTGTCAAGAGGATGGAATCTGTTGCAATGGGAAACAAAGGGATGAATGAGTTCCAAGCGGAGATTTCTGTTCTTAGTAAGGTTAGGCATAGACATTTGGTTGCTCTATTGGGATATTGCATCAATGGCAATGAGAGGCTTTTGGTGTATGAGTATATGCCTCAAGGGACTTTAACACAGCACCTGTTTGAATGGCGTGAACATGGGTATGCTCCTTTGACATGGAAACAAAGGGTGACAATAGCTTTGGATGTAGCGCGGGGGGTGGAATATTTGCACAGCTTAGCTCAGCAAAGCTTCATCCATAGAGACTTAAAGCCCTCAAACATACTATTAGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGTACTGGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCCGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTCTACGCATTTGGGGTAGTTTTGATGGAACTGATCACCGGTAGAAAAGCATTGGACGATAGTGTGCCTGATGAAAGGTCTCACTTGGTTACGTGGTTCAGAAGGGTGCTGATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAACTCTAAACCCAGATGAGGAAACCATGGAGAGCATATATATAGTAGCTGAGCTGGCTGGCCATTGCACTGCTCGTGAACCATACCAAAGACCGGATATGGGGCATGCAGTGAATGTGTTGGTACCCCTTGTGGAGCAATGGAAACCTACTACTAGCCACAGAGAAGAAGATGGTTATGGCATTGACCTTGAGATGAGCCTTCCCCAAGCACTACAAAGGTGGCAAGCCAATGAAGGCACTTCCACANTATTCAATGACATGTCCTTCTCACAAACCCAATCAAGCATCCCCTCTAAAGCTTCAGGATTTGCTGACTCCTTTGGCTCATTGGATTGCCGGTAACCAAATTGATAATAATGAGACACCATCCATAACCAAGGGCTTCTTTCTTCCTTAGTCCTTATGAGAGTGGAAGAATTGCTTGAGGTAAAAAAATACCCAAGAAAACCGAAGGTTAATTCAACCTGTTTGATCTGGTAGCATCACCAAATTGTATGCGGAAATTTTTTTTTATTAATTTTGAATATGTCATTTTTTGTGTTTTTGAAATCTCCTTTANTGAGATAAGCTAAATATTTAAGTTTGATGTTCTTTATTGATTCTTTTAAGCTGACGGATGGATTTTAAAAGATGATGGGAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00692	113684	117509	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000692s00016563.1	PF08263.7	LRRNT_2	21	56	9.50E-05
Glyur000692s00016563.1	PF13516.1	LRR_6	181	202	0.56
Glyur000692s00016563.1	PF08263.7	LRRNT_2	324	356	0.71
Glyur000692s00016563.1	PF13855.1	LRR_8	371	419	4.30E-07
Glyur000692s00016563.1	PF00069.20	Pkinase	580	850	3.50E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.364
SRR1783600	control	2.409
SRR1783602	moderate drought stress	1.836
SRR1811619	moderate drought stress	1.727

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.073
DRR006520	Root Summer glycyrrhizin high producing strain	1.032
DRR006521	Root Winter glycyrrhizin high producing strain	1.086
DRR006522	Root Winter glycyrrhizin high producing strain	1.129
DRR006523	Root Summer glycyrrhizin low producing strain	1.288
DRR006524	Root Summer glycyrrhizin low producing strain	1.245
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.422
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.421

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.775
SRR2868004	Drought Stress(Tissue:root)	1.147
SRR2967015	Control (Tissue:root)	1.204

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.579
SRR9715740	Leave	0.082
SRR9715741	Leave	0.340
SRR9715739	Root	0.843
SRR9715742	Root	1.028
SRR9715743	Root	1.342

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.548
SRR8749028	MeJA induced 9h	0.444
SRR8749029	MeJA induced 9h	0.168
SRR8749030	Uninduced	0.100
SRR8749031	Uninduced	0.074
SRR8749032	Uninduced	0.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.289
SRR8400027	Control-Root	1.316