Gene detail information of Glyur000693s00025747.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17300.1 | 5.00E-45 | Homeodomain-like superfamily protein |
| NR | XP_004490782.1 | 0 | PREDICTED: uncharacterized protein LOC101488702 isoform X1 [Cicer arietinum] |
| Swissprot | tr|F4KGY6|RVE1_ARATH | 7.00E-57 | Protein REVEILLE 1 |
| trEMBL | tr|I1MBR6|I1MBR6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G39130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00693 | 70976 | 74822 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000693s00025747.1 | PF00249.26 | Myb_DNA-binding | 59 | 103 | 7.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.618 |
| SRR1783600 | control | 2.667 |
| SRR1783602 | moderate drought stress | 3.003 |
| SRR1811619 | moderate drought stress | 2.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.790 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.453 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.922 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.847 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.472 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.647 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.637 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.284 |
| SRR2868004 | Drought Stress(Tissue:root) | 38.511 |
| SRR2967015 | Control (Tissue:root) | 41.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.318 |
| SRR9715740 | Leave | 1.098 |
| SRR9715741 | Leave | 2.569 |
| SRR9715739 | Root | 3.643 |
| SRR9715742 | Root | 5.549 |
| SRR9715743 | Root | 4.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.158 |
| SRR8749028 | MeJA induced 9h | 41.393 |
| SRR8749029 | MeJA induced 9h | 32.598 |
| SRR8749030 | Uninduced | 12.115 |
| SRR8749031 | Uninduced | 28.787 |
| SRR8749032 | Uninduced | 26.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 45.098 |
| SRR8400027 | Control-Root | 31.054 |