Gene detail information of Glyur000694s00023241.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27500.2 | 4.00E-149 | Glycosyl hydrolase superfamily protein |
| NR | XP_006593414.1 | 0 | PREDICTED: uncharacterized protein LOC100786020 isoform X1 [Glycine max] |
| Swissprot | tr|Q9ZQG9|E1314_ARATH | 0 | Glucan endo-1,3-beta-glucosidase 14 (Precursor) |
| trEMBL | tr|I1M4C5|I1M4C5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G39261.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00694 | 12019 | 16366 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000694s00023241.1 | PF00332.13 | Glyco_hydro_17 | 29 | 348 | 3.10E-99 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.665 |
| SRR1783600 | control | 9.632 |
| SRR1783602 | moderate drought stress | 7.136 |
| SRR1811619 | moderate drought stress | 6.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.481 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.938 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.180 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.461 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.132 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.978 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.336 |
| SRR2967015 | Control (Tissue:root) | 11.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.982 |
| SRR9715740 | Leave | 10.303 |
| SRR9715741 | Leave | 10.947 |
| SRR9715739 | Root | 4.244 |
| SRR9715742 | Root | 14.836 |
| SRR9715743 | Root | 11.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.356 |
| SRR8749028 | MeJA induced 9h | 87.917 |
| SRR8749029 | MeJA induced 9h | 74.073 |
| SRR8749030 | Uninduced | 134.795 |
| SRR8749031 | Uninduced | 160.175 |
| SRR8749032 | Uninduced | 111.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.197 |
| SRR8400027 | Control-Root | 13.882 |