Gene detail information of Glyur000694s00023258.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08290.1 | 1.00E-86 | WIP domain protein 3 |
| NR | XP_003596796.1 | 1.77E-154 | Protein TRANSPARENT TESTA [Medicago truncatula] |
| Swissprot | tr|Q9SGD1|ZWIP3_ARATH | 1.00E-117 | Zinc finger protein WIP3 |
| trEMBL | tr|V7BVS6|V7BVS6_PHAVU | 2.00E-154 | Uncharacterized protein {ECO:0000313|EMBL:ESW22074.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00694 | 113283 | 117044 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000694s00023258.1 | PF13894.1 | zf-C2H2_4 | 165 | 184 | 0.00021 |
| Glyur000694s00023258.1 | PF13894.1 | zf-C2H2_4 | 250 | 271 | 0.31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 47.175 |
| SRR1783600 | control | 47.229 |
| SRR1783602 | moderate drought stress | 31.792 |
| SRR1811619 | moderate drought stress | 31.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.414 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.539 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.198 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.947 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.775 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.636 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.038 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.357 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.168 |
| SRR2967015 | Control (Tissue:root) | 2.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.507 |
| SRR9715740 | Leave | 0.794 |
| SRR9715741 | Leave | 0.655 |
| SRR9715739 | Root | 20.379 |
| SRR9715742 | Root | 10.022 |
| SRR9715743 | Root | 12.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.534 |
| SRR8749028 | MeJA induced 9h | 1.893 |
| SRR8749029 | MeJA induced 9h | 4.275 |
| SRR8749030 | Uninduced | 3.101 |
| SRR8749031 | Uninduced | 7.172 |
| SRR8749032 | Uninduced | 9.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.289 |
| SRR8400027 | Control-Root | 20.624 |