Gene detail information of Glyur000695s00020662.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04730.1 | 3.00E-69 | indoleacetic acid-induced protein 16 |
| NR | KHN31465.1 | 1.74E-104 | Auxin-responsive protein IAA16 [Glycine soja] |
| Swissprot | tr|O24407|IAA16_ARATH | 3.00E-90 | Auxin-responsive protein IAA16 |
| trEMBL | tr|B9I5F9|B9I5F9_POPTR | 5.00E-104 | Auxin-responsive protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00695 | 50442 | 54994 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000695s00020662.1 | PF02309.11 | AUX_IAA | 16 | 261 | 1.70E-80 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.984 |
| SRR1783600 | control | 19.143 |
| SRR1783602 | moderate drought stress | 33.944 |
| SRR1811619 | moderate drought stress | 33.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.823 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.666 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.357 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.226 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.224 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.225 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.580 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.217 |
| SRR2868004 | Drought Stress(Tissue:root) | 62.208 |
| SRR2967015 | Control (Tissue:root) | 65.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 60.486 |
| SRR9715740 | Leave | 84.708 |
| SRR9715741 | Leave | 61.864 |
| SRR9715739 | Root | 23.832 |
| SRR9715742 | Root | 28.743 |
| SRR9715743 | Root | 29.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.720 |
| SRR8749028 | MeJA induced 9h | 52.993 |
| SRR8749029 | MeJA induced 9h | 32.740 |
| SRR8749030 | Uninduced | 5.905 |
| SRR8749031 | Uninduced | 22.247 |
| SRR8749032 | Uninduced | 13.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 41.009 |
| SRR8400027 | Control-Root | 36.545 |