Gene detail information of Glyur000695s00020671.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G28840.20GDP-D-mannose 3',5'-epimerase
NRNP_001276258.10uncharacterized protein LOC100527798 [Glycine max]
COGYP_589972.16.00E-124NAD-dependent epimerase/dehydratase [Candidatus Koribacter versatilis Ellin345]
Swissprottr|Q2R1V8|GME2_ORYSJ0GDP-mannose 3,5-epimerase 2
trEMBLtr|I1NC94|I1NC94_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G43410.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0069597645101470+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10046GME EC:5.1.3.18 5.1.3.- Ascorbate and aldarate metabolism map00053
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0050662  coenzyme binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000695s00020671.1PF01370.16Epimerase312642.80E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control85.406
SRR1783600control85.960
SRR1783602moderate drought stress107.770
SRR1811619moderate drought stress106.882

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.333
DRR006520Root Summer glycyrrhizin high producing strain23.489
DRR006521Root Winter glycyrrhizin high producing strain6.919
DRR006522Root Winter glycyrrhizin high producing strain6.723
DRR006523Root Summer glycyrrhizin low producing strain11.564
DRR006524Root Summer glycyrrhizin low producing strain11.727
DRR006525Leaf Summer glycyrrhizin high producing strain184.106
DRR006526Leaf Summer glycyrrhizin high producing strain182.831

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)49.163
SRR2868004Drought Stress(Tissue:root)65.914
SRR2967015Control (Tissue:root)49.809

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave416.273
SRR9715740Leave352.042
SRR9715741Leave219.968
SRR9715739Root155.087
SRR9715742Root137.308
SRR9715743Root137.159

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.472
SRR8749028MeJA induced 9h19.755
SRR8749029MeJA induced 9h21.017
SRR8749030Uninduced7.795
SRR8749031Uninduced4.908
SRR8749032Uninduced7.958

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root83.937
SRR8400027Control-Root40.563

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved