Gene detail information of Glyur000697s00030023.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53190.1 | 5.00E-148 | Pectin lyase-like superfamily protein |
| NR | KEH42160.1 | 0 | pectate lyase-like protein [Medicago truncatula] |
| COG | YP_004456954.1 | 2.00E-18 | pectate lyase [Melissococcus plutonius ATCC 35311] |
| Swissprot | tr|Q9SCP2|PLY12_ARATH | 0 | Probable pectate lyase 12 (Precursor) |
| trEMBL | tr|A0A072VVN7|A0A072VVN7_MEDTR | 0 | Pectate lyase {ECO:0000256|RuleBase:RU361123} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00697 | 34762 | 40837 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01728 | pel | EC:4.2.2.2 | Pentose and glucuronate interconversions | map00040 |
| Quorum sensing | map02024 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000697s00030023.1 | PF00544.14 | Pec_lyase_C | 118 | 298 | 2.80E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.562 |
| SRR1783600 | control | 1.587 |
| SRR1783602 | moderate drought stress | 2.343 |
| SRR1811619 | moderate drought stress | 2.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.831 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.248 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.123 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.293 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.362 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.390 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.322 |
| SRR2967015 | Control (Tissue:root) | 11.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.640 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.113 |
| SRR9715739 | Root | 1.308 |
| SRR9715742 | Root | 1.570 |
| SRR9715743 | Root | 1.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.513 |
| SRR8749028 | MeJA induced 9h | 0.063 |
| SRR8749029 | MeJA induced 9h | 0.560 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.061 |
| SRR8400027 | Control-Root | 10.470 |