Gene detail information of Glyur000698s00016585.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38180.1 | 2.00E-23 | FAR1-related sequence 5 |
| NR | CAN68840.1 | 6.25E-56 | hypothetical protein VITISV_003678 [Vitis vinifera] |
| Swissprot | tr|Q9SZL8|FRS5_ARATH | 3.00E-24 | Protein FAR1-RELATED SEQUENCE 5 |
| trEMBL | tr|A5CAC2|A5CAC2_VITVI | 2.00E-56 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN68840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00698 | 77447 | 79540 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000698s00016585.1 | PF03101.10 | FAR1 | 81 | 168 | 7.10E-12 |
| Glyur000698s00016585.1 | PF04434.12 | SWIM | 416 | 434 | 0.0004 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.307 |
| SRR1783600 | control | 0.267 |
| SRR1783602 | moderate drought stress | 0.816 |
| SRR1811619 | moderate drought stress | 0.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.485 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.641 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.239 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.181 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.312 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.062 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.247 |
| SRR2967015 | Control (Tissue:root) | 1.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.060 |
| SRR9715740 | Leave | 0.114 |
| SRR9715741 | Leave | 0.020 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.090 |
| SRR8749028 | MeJA induced 9h | 0.959 |
| SRR8749029 | MeJA induced 9h | 0.636 |
| SRR8749030 | Uninduced | 0.933 |
| SRR8749031 | Uninduced | 0.618 |
| SRR8749032 | Uninduced | 0.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.340 |
| SRR8400027 | Control-Root | 0.229 |