Gene detail information of Glyur000699s00025409.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30950.1 | 5.00E-180 | fatty acid desaturase 6 |
| NR | XP_004507729.1 | 0 | PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Cicer arietinum] |
| COG | YP_001660371.1 | 8.00E-121 | delta 12 acyl-lipid desaturase [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|P48628|FAD6C_SOYBN | 0 | Omega-6 fatty acid desaturase, chloroplastic (Precursor) |
| trEMBL | tr|I1JGN9|I1JGN9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G36460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00699 | 8290 | 16370 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10255 | FAD6, desA | EC:1.14.19.23 1.14.19.45 | Two-component system | map02020 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000699s00025409.1 | PF00487.19 | FA_desaturase | 145 | 391 | 3.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.545 |
| SRR1783600 | control | 4.519 |
| SRR1783602 | moderate drought stress | 6.166 |
| SRR1811619 | moderate drought stress | 6.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.810 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.792 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.145 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.845 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.901 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.070 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.381 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.770 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.574 |
| SRR2967015 | Control (Tissue:root) | 18.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 29.825 |
| SRR9715740 | Leave | 26.520 |
| SRR9715741 | Leave | 32.222 |
| SRR9715739 | Root | 8.046 |
| SRR9715742 | Root | 8.808 |
| SRR9715743 | Root | 8.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.579 |
| SRR8749028 | MeJA induced 9h | 29.477 |
| SRR8749029 | MeJA induced 9h | 19.220 |
| SRR8749030 | Uninduced | 20.419 |
| SRR8749031 | Uninduced | 21.568 |
| SRR8749032 | Uninduced | 23.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.849 |
| SRR8400027 | Control-Root | 8.164 |