Gene detail information of Glyur000700s00037061.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03170.1 | 4.00E-24 | SKP1-like 14 |
| NR | XP_004488771.1 | 5.44E-55 | PREDICTED: SKP1-like protein 14-like [Cicer arietinum] |
| Swissprot | tr|Q9LNT9|ASK4_ARATH | 1.00E-35 | SKP1-like protein 4 |
| trEMBL | tr|A0A067JME9|A0A067JME9_JATCU | 4.00E-54 | Uncharacterized protein {ECO:0000313|EMBL:KDP25072.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00700 | 109376 | 116438 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | SKP1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000700s00037061.1 | PF03931.10 | Skp1_POZ | 14 | 73 | 5.60E-10 |
| Glyur000700s00037061.1 | PF01466.14 | Skp1 | 88 | 165 | 5.20E-23 |
| Glyur000700s00037061.1 | PF03931.10 | Skp1_POZ | 190 | 248 | 1.80E-12 |
| Glyur000700s00037061.1 | PF01466.14 | Skp1 | 264 | 340 | 1.80E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.193 |
| SRR1783600 | control | 7.584 |
| SRR1783602 | moderate drought stress | 6.935 |
| SRR1811619 | moderate drought stress | 6.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.595 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.102 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.433 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.183 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.990 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.900 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.004 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.617 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.803 |
| SRR2967015 | Control (Tissue:root) | 10.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.068 |
| SRR9715740 | Leave | 9.423 |
| SRR9715741 | Leave | 14.611 |
| SRR9715739 | Root | 38.811 |
| SRR9715742 | Root | 24.177 |
| SRR9715743 | Root | 30.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.688 |
| SRR8749028 | MeJA induced 9h | 17.227 |
| SRR8749029 | MeJA induced 9h | 9.057 |
| SRR8749030 | Uninduced | 4.342 |
| SRR8749031 | Uninduced | 3.811 |
| SRR8749032 | Uninduced | 6.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.298 |
| SRR8400027 | Control-Root | 3.619 |