Gene detail information of Glyur000700s00037063.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G56170.23.00E-62nuclear factor Y, subunit C2
NRXP_007149200.12.43E-142hypothetical protein PHAVU_005G050000g [Phaseolus vulgaris]
Swissprottr|Q8LCG7|NFYC2_ARATH2.00E-78Nuclear transcription factor Y subunit C-2
trEMBLtr|V7BTC1|V7BTC1_PHAVU9.00E-143Uncharacterized protein {ECO:0000313|EMBL:ESW21194.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00700119198120004-


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC
EAR motif-containing ProteinsNF-YC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005622  intracellular

GO:0016602  CCAAT-binding factor complex


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000700s00037063.1PF00808.18CBFD_NFYB_HMF1061691.80E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.851
SRR1783600control36.568
SRR1783602moderate drought stress52.132
SRR1811619moderate drought stress52.099

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.872
DRR006520Root Summer glycyrrhizin high producing strain55.100
DRR006521Root Winter glycyrrhizin high producing strain46.452
DRR006522Root Winter glycyrrhizin high producing strain45.253
DRR006523Root Summer glycyrrhizin low producing strain87.130
DRR006524Root Summer glycyrrhizin low producing strain86.230
DRR006525Leaf Summer glycyrrhizin high producing strain28.187
DRR006526Leaf Summer glycyrrhizin high producing strain29.105

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.718
SRR2868004Drought Stress(Tissue:root)35.041
SRR2967015Control (Tissue:root)29.085

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.391
SRR9715740Leave50.416
SRR9715741Leave63.270
SRR9715739Root6.052
SRR9715742Root24.027
SRR9715743Root16.717

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h65.117
SRR8749028MeJA induced 9h140.016
SRR8749029MeJA induced 9h56.429
SRR8749030Uninduced50.662
SRR8749031Uninduced10.076
SRR8749032Uninduced18.857

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root61.046
SRR8400027Control-Root46.886

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved