Gene detail information of Glyur000701s00019649.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G17940.1 | 1.00E-138 | Galactose mutarotase-like superfamily protein |
NR | AFK40570.1 | 0 | unknown [Lotus japonicus] |
COG | YP_008148073.1 | 7.00E-101 | aldose 1-epimerase [Sorangium cellulosum So0157-2] |
trEMBL | tr|I3SJX8|I3SJX8_LOTJA | 0 | Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096} |
Sequence
Transcript Sequence |
---|
Protein Sequence |
---|
Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00701 | 41656 | 44227 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01785 | galM, GALM | EC:5.1.3.3 | Glycolysis / Gluconeogenesis | map00010 |
Galactose metabolism | map00052 |
Gene Ontology
|
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000701s00019649.1 | PF01263.15 | Aldose_epim | 11 | 334 | 5.90E-94 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 93.346 |
SRR1783600 | control | 93.325 |
SRR1783602 | moderate drought stress | 88.702 |
SRR1811619 | moderate drought stress | 88.132 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 61.830 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 59.876 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 15.309 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 15.219 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 90.250 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 89.135 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.377 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.860 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 51.222 |
SRR2868004 | Drought Stress(Tissue:root) | 47.174 |
SRR2967015 | Control (Tissue:root) | 43.055 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 26.025 |
SRR9715740 | Leave | 16.445 |
SRR9715741 | Leave | 20.985 |
SRR9715739 | Root | 50.853 |
SRR9715742 | Root | 47.112 |
SRR9715743 | Root | 49.568 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 45.894 |
SRR8749028 | MeJA induced 9h | 42.412 |
SRR8749029 | MeJA induced 9h | 47.985 |
SRR8749030 | Uninduced | 22.333 |
SRR8749031 | Uninduced | 11.506 |
SRR8749032 | Uninduced | 23.310 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 54.681 |
SRR8400027 | Control-Root | 62.697 |