Gene detail information of Glyur000702s00024636.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76130.10alpha-amylase-like 2
NRXP_004499317.10PREDICTED: probable alpha-amylase 2-like isoform X4 [Cicer arietinum]
COGYP_003951996.12.00E-118alpha-amylase [Stigmatella aurantiaca DW4/3-1]
Swissprottr|Q8LFG1|AMY2_ARATH0Probable alpha-amylase 2
trEMBLtr|G7I8E1|G7I8E1_MEDTR0Alpha-amylase {ECO:0000256|RuleBase:RU361134}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007022441328854-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01176AMY, amyA, malS EC:3.2.1.1 Starch and sucrose metabolism map00500
Carbohydrate digestion and absorptionmap04973


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004556  alpha-amylase activity

GO:0005509  calcium ion binding

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000702s00024636.1PF00128.19Alpha-amylase643522.90E-19
Glyur000702s00024636.1PF07821.7Alpha-amyl_C23744327.60E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.150
SRR1783600control7.206
SRR1783602moderate drought stress17.289
SRR1811619moderate drought stress17.172

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.909
DRR006520Root Summer glycyrrhizin high producing strain25.903
DRR006521Root Winter glycyrrhizin high producing strain21.282
DRR006522Root Winter glycyrrhizin high producing strain20.965
DRR006523Root Summer glycyrrhizin low producing strain74.573
DRR006524Root Summer glycyrrhizin low producing strain74.547
DRR006525Leaf Summer glycyrrhizin high producing strain38.317
DRR006526Leaf Summer glycyrrhizin high producing strain38.201

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.549
SRR2868004Drought Stress(Tissue:root)18.896
SRR2967015Control (Tissue:root)20.579

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.447
SRR9715740Leave47.517
SRR9715741Leave37.624
SRR9715739Root4.122
SRR9715742Root18.067
SRR9715743Root15.677

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.308
SRR8749028MeJA induced 9h23.992
SRR8749029MeJA induced 9h17.777
SRR8749030Uninduced32.667
SRR8749031Uninduced32.101
SRR8749032Uninduced35.427

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.629
SRR8400027Control-Root12.215

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved