Gene detail information of Glyur000702s00024637.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17700.1 | 6.00E-122 | ACT-like protein tyrosine kinase family protein |
| NR | XP_003589567.1 | 0 | Protein kinase like protein [Medicago truncatula] |
| COG | YP_001958461.1 | 4.00E-23 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q2MHE4|HT1_ARATH | 7.00E-50 | Serine/threonine-protein kinase HT1 |
| trEMBL | tr|A0A072VFL3|A0A072VFL3_MEDTR | 0 | ACT-like tyrosine kinase family protein {ECO:0000313|EMBL:KEH40243.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00702 | 33318 | 39379 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:2.1.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000702s00024637.1 | PF07714.12 | Pkinase_Tyr | 253 | 503 | 6.00E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.087 |
| SRR1783600 | control | 0.070 |
| SRR1783602 | moderate drought stress | 0.174 |
| SRR1811619 | moderate drought stress | 0.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.093 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.133 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.399 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.440 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.725 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.552 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.067 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.138 |
| SRR2967015 | Control (Tissue:root) | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.076 |
| SRR9715740 | Leave | 0.420 |
| SRR9715741 | Leave | 0.249 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.008 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.175 |
| SRR8749028 | MeJA induced 9h | 0.338 |
| SRR8749029 | MeJA induced 9h | 0.340 |
| SRR8749030 | Uninduced | 0.320 |
| SRR8749031 | Uninduced | 0.526 |
| SRR8749032 | Uninduced | 0.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.079 |
| SRR8400027 | Control-Root | 0.070 |