Gene detail information of Glyur000702s00024648.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G42200.11.00E-33RING/U-box superfamily protein
NRXP_003545016.15.72E-71PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Glycine max]
Swissprottr|Q8L9W3|ATL23_ARATH2.00E-41E3 ubiquitin-protein ligase ATL23
trEMBLtr|I1MC10|I1MC10_SOYBN2.00E-71Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G40110.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007028330283688-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000702s00024648.1PF13639.1zf-RING_2701132.30E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control183.572
SRR1783600control183.849
SRR1783602moderate drought stress161.493
SRR1811619moderate drought stress167.811

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain65.864
DRR006520Root Summer glycyrrhizin high producing strain65.988
DRR006521Root Winter glycyrrhizin high producing strain2.012
DRR006522Root Winter glycyrrhizin high producing strain1.791
DRR006523Root Summer glycyrrhizin low producing strain46.487
DRR006524Root Summer glycyrrhizin low producing strain49.791
DRR006525Leaf Summer glycyrrhizin high producing strain5.716
DRR006526Leaf Summer glycyrrhizin high producing strain4.113

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.172
SRR2868004Drought Stress(Tissue:root)17.400
SRR2967015Control (Tissue:root)15.652

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.420
SRR9715740Leave5.640
SRR9715741Leave2.994
SRR9715739Root47.688
SRR9715742Root28.997
SRR9715743Root29.025

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.912
SRR8749028MeJA induced 9h25.478
SRR8749029MeJA induced 9h77.581
SRR8749030Uninduced9.562
SRR8749031Uninduced4.755
SRR8749032Uninduced32.205

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.046
SRR8400027Control-Root38.149

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved