Gene detail information of Glyur000704s00022935.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G06600.10ubiquitin-specific protease 12
NRXP_004502026.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like isoform X2 [Cicer arietinum]
Swissprottr|Q9FPT1|UBP12_ARATH0Ubiquitin carboxyl-terminal hydrolase 12
trEMBLtr|G7J6M6|G7J6M6_MEDTR0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007042879144642-


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11838USP7, UBP15 EC:3.4.19.12 FoxO signaling pathway map04068
Viral carcinogenesismap05203
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0005515  protein binding

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000704s00022935.1PF00917.21MATH611839.90E-19
Glyur000704s00022935.1PF00443.24UCH2025245.50E-53
Glyur000704s00022935.1PF12436.3USP7_ICP0_bdg6288802.60E-92
Glyur000704s00022935.1PF14533.1USP7_C288911035.50E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.685
SRR1783600control29.858
SRR1783602moderate drought stress30.395
SRR1811619moderate drought stress30.453

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain44.470
DRR006520Root Summer glycyrrhizin high producing strain44.466
DRR006521Root Winter glycyrrhizin high producing strain66.102
DRR006522Root Winter glycyrrhizin high producing strain64.040
DRR006523Root Summer glycyrrhizin low producing strain36.475
DRR006524Root Summer glycyrrhizin low producing strain36.878
DRR006525Leaf Summer glycyrrhizin high producing strain25.651
DRR006526Leaf Summer glycyrrhizin high producing strain25.602

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)59.044
SRR2868004Drought Stress(Tissue:root)59.277
SRR2967015Control (Tissue:root)57.612

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.413
SRR9715740Leave31.891
SRR9715741Leave38.329
SRR9715739Root5.089
SRR9715742Root36.904
SRR9715743Root29.442

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.027
SRR8749028MeJA induced 9h56.171
SRR8749029MeJA induced 9h19.858
SRR8749030Uninduced28.975
SRR8749031Uninduced22.207
SRR8749032Uninduced13.862

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root56.566
SRR8400027Control-Root53.419

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved