Gene detail information of Glyur000705s00027465.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G23790.10AMP-dependent synthetase and ligase family protein
NRXP_003537522.10PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Glycine max]
COGYP_007172371.16.00E-167AMP-forming long-chain acyl-CoA synthetase [Dactylococcopsis salina PCC 8305]
Swissprottr|Q9LK39|AAE16_ARATH0Probable acyl-activating enzyme 16, chloroplastic (Precursor)
trEMBLtr|K7LRX9|K7LRX9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G36690.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007054901562043+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000705s00027465.1PF00501.23AMP-binding925951.50E-87


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.389
SRR1783600control5.654
SRR1783602moderate drought stress6.585
SRR1811619moderate drought stress6.563

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.513
DRR006520Root Summer glycyrrhizin high producing strain3.484
DRR006521Root Winter glycyrrhizin high producing strain8.025
DRR006522Root Winter glycyrrhizin high producing strain7.781
DRR006523Root Summer glycyrrhizin low producing strain6.243
DRR006524Root Summer glycyrrhizin low producing strain6.046
DRR006525Leaf Summer glycyrrhizin high producing strain17.823
DRR006526Leaf Summer glycyrrhizin high producing strain17.735

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.510
SRR2868004Drought Stress(Tissue:root)19.172
SRR2967015Control (Tissue:root)21.664

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.177
SRR9715740Leave22.226
SRR9715741Leave24.445
SRR9715739Root2.162
SRR9715742Root4.912
SRR9715743Root4.783

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.399
SRR8749028MeJA induced 9h11.773
SRR8749029MeJA induced 9h5.899
SRR8749030Uninduced12.175
SRR8749031Uninduced4.412
SRR8749032Uninduced5.657

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.099
SRR8400027Control-Root17.140

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved