Gene detail information of Glyur000706s00025007.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24400.13.00E-91NagB/RpiA/CoA transferase-like superfamily protein
NRXP_003602317.15.20E-1726-phosphogluconolactonase [Medicago truncatula]
COGYP_001321257.13.00E-496-phosphogluconolactonase [Alkaliphilus metalliredigens QYMF]
Swissprottr|Q69NG5|6PGL4_ORYSJ1.00E-116Probable 6-phosphogluconolactonase 4, chloroplastic (Precursor)
trEMBLtr|G7J870|G7J870_MEDTR2.00E-172Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase {ECO:0000313|EMBL:AES72568.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007062561930568+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01057PGLS, pgl, devB EC:3.1.1.31 Carbon metabolism map01200
Pentose phosphate pathwaymap00030


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006098  pentose-phosphate shunt


molecular_function

GO:0017057  6-phosphogluconolactonase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000706s00025007.1PF01182.15Glucosamine_iso772641.10E-55


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control81.301
SRR1783600control81.190
SRR1783602moderate drought stress94.479
SRR1811619moderate drought stress94.882

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain100.118
DRR006520Root Summer glycyrrhizin high producing strain98.200
DRR006521Root Winter glycyrrhizin high producing strain34.618
DRR006522Root Winter glycyrrhizin high producing strain33.972
DRR006523Root Summer glycyrrhizin low producing strain84.587
DRR006524Root Summer glycyrrhizin low producing strain83.220
DRR006525Leaf Summer glycyrrhizin high producing strain32.243
DRR006526Leaf Summer glycyrrhizin high producing strain31.689

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)98.209
SRR2868004Drought Stress(Tissue:root)100.377
SRR2967015Control (Tissue:root)90.786

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave55.441
SRR9715740Leave48.809
SRR9715741Leave63.461
SRR9715739Root199.206
SRR9715742Root130.397
SRR9715743Root141.291

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.009
SRR8749028MeJA induced 9h29.307
SRR8749029MeJA induced 9h31.445
SRR8749030Uninduced13.596
SRR8749031Uninduced3.833
SRR8749032Uninduced17.481

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root81.836
SRR8400027Control-Root81.780

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved