Gene detail information of Glyur000709s00024175.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G15490.10UDP-glucose 6-dehydrogenase family protein
NRADT91651.10putative uridine diphosphate glucose dehydrogenase [Galega orientalis]
COGYP_003548756.10nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221]
Swissprottr|Q96558|UGDH1_SOYBN0UDP-glucose 6-dehydrogenase 1
trEMBLtr|E7D037|E7D037_9FABA0UDP-glucose 6-dehydrogenase {ECO:0000256|PIRNR:PIRNR000124}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007093523636678+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00012UGDH, ugd EC:1.1.1.22 Pentose and glucuronate interconversions map00040
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003979  UDP-glucose 6-dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000709s00024175.1PF03721.9UDPG_MGDP_dh_N31843.90E-65
Glyur000709s00024175.1PF00984.14UDPG_MGDP_dh2093062.70E-33
Glyur000709s00024175.1PF03720.10UDPG_MGDP_dh_C3284511.10E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control239.808
SRR1783600control241.106
SRR1783602moderate drought stress79.658
SRR1811619moderate drought stress77.981

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain403.196
DRR006520Root Summer glycyrrhizin high producing strain403.746
DRR006521Root Winter glycyrrhizin high producing strain127.982
DRR006522Root Winter glycyrrhizin high producing strain124.592
DRR006523Root Summer glycyrrhizin low producing strain516.251
DRR006524Root Summer glycyrrhizin low producing strain519.019
DRR006525Leaf Summer glycyrrhizin high producing strain98.184
DRR006526Leaf Summer glycyrrhizin high producing strain97.103

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)325.603
SRR2868004Drought Stress(Tissue:root)242.521
SRR2967015Control (Tissue:root)225.311

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave174.765
SRR9715740Leave166.189
SRR9715741Leave188.016
SRR9715739Root505.952
SRR9715742Root651.217
SRR9715743Root617.395

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h658.526
SRR8749028MeJA induced 9h456.023
SRR8749029MeJA induced 9h678.727
SRR8749030Uninduced1053.192
SRR8749031Uninduced295.612
SRR8749032Uninduced515.028

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root137.587
SRR8400027Control-Root254.063

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved