Gene detail information of Glyur000709s00024180.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15470.1 | 0 | galacturonosyltransferase 14 |
| NR | XP_004491881.1 | 0 | PREDICTED: probable galacturonosyltransferase 14-like [Cicer arietinum] |
| COG | YP_002770215.1 | 3.00E-07 | hypothetical protein BBR47_07340 [Brevibacillus brevis NBRC 100599] |
| Swissprot | tr|Q8GWT1|GAUTE_ARATH | 0 | Probable galacturonosyltransferase 14 |
| trEMBL | tr|V7B0Z9|V7B0Z9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW11499.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00709 | 47204 | 52800 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000709s00024180.1 | PF01501.15 | Glyco_transf_8 | 207 | 537 | 8.80E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.552 |
| SRR1783600 | control | 20.895 |
| SRR1783602 | moderate drought stress | 13.842 |
| SRR1811619 | moderate drought stress | 13.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.340 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.273 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.056 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.513 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.727 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.722 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.992 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 36.117 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.180 |
| SRR2967015 | Control (Tissue:root) | 28.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.146 |
| SRR9715740 | Leave | 19.810 |
| SRR9715741 | Leave | 24.714 |
| SRR9715739 | Root | 9.151 |
| SRR9715742 | Root | 25.377 |
| SRR9715743 | Root | 21.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.207 |
| SRR8749028 | MeJA induced 9h | 36.990 |
| SRR8749029 | MeJA induced 9h | 33.575 |
| SRR8749030 | Uninduced | 42.962 |
| SRR8749031 | Uninduced | 42.943 |
| SRR8749032 | Uninduced | 29.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.936 |
| SRR8400027 | Control-Root | 26.637 |